gatk3的最后一个经典版本3.8

Mauricio Carneiro 815028edd4 Added verbose error message to the PluginManager ... -- added a logger.error with a more descriptive message of what the most likely cause of the error is Typical error happens when a walker's global variable is not initialized properly (usually in test conditions). The old error message was very hard to understand "Could not create module because of an exception of type NullPointerException ocurred caused by exception null"		2013-02-19 16:00:35 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	ActivityProfile and ActiveRegions respects engine interval boundaries	2013-02-18 10:40:25 -05:00
public	Added verbose error message to the PluginManager	2013-02-19 16:00:35 -05:00
settings	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00