gatk-3.8/scala/test/org/broadinstitute/sting/queue/pipeline
kshakir f1f9bd6dcc Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit.
TODO: Switch to bulk status checks and add status archive lookups.
Sending SIGTERM(15) instead of SIGKILL(9) to allow for graceful termination of child process.
Printing out the name of the QScripts in the compile error text.
Added a pipelineretry -PR pass through for the MFCP and MFCPTest.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5295 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-23 18:59:08 +00:00
..
examples Added pipeline for calling FCP in batches called MultiFullCallingPipeline. 2011-02-15 18:26:14 +00:00
playground Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit. 2011-02-23 18:59:08 +00:00
IPFLibraryPipelineTest.scala Renamed the IPFL Test to IPFL PipelineTest so that it'll be picked up by the PipelineTests. 2011-02-05 00:06:12 +00:00
PipelineTest.scala Added pipeline for calling FCP in batches called MultiFullCallingPipeline. 2011-02-15 18:26:14 +00:00
PipelineTestEvalSpec.scala Moved MD5 utils from WalkerTest to BaseTest for use by PipelineTests. 2011-01-25 04:11:49 +00:00
PipelineTestSpec.scala Moved the test name and the job queue into the spec. 2011-01-29 00:07:25 +00:00