gatk-3.8/scala/qscript/oneoffs/carneiro
carneiro 81414a21dd dpp: back to using 4gb memory assuming all is right with IndelRealigner now.
mdcp: Some class structural changes due to the inclusion of indel calls. ApplyCut now chooses the tranche differently for each dataset.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5319 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-25 19:21:02 +00:00
..
dataProcessing.scala dpp: back to using 4gb memory assuming all is right with IndelRealigner now. 2011-02-25 19:21:02 +00:00
pbCalling.scala Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done. 2011-02-16 17:22:30 +00:00