chartl 87f8fb7282 Quick commit in advance of Aaron's. Just a bunch of refactoring (private classes separated out, put in proper package). Also support added for coverage by read group rather than sample. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2897 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-26 16:39:47 +00:00
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coverage	Quick commit in advance of Aaron's. Just a bunch of refactoring (private classes separated out, put in proper package). Also support added for coverage by read group rather than sample.	2010-02-26 16:39:47 +00:00
varianteval2	Support for no qual fields in VCF; better support for Mendelian violation calculations	2010-02-26 00:29:17 +00:00