Mark DePristo 80b94a4f9a AdaptiveContexts implement pruning to a given chi2 p value ... -- Added bonferroni corrected p-value pruning, so you tell it how significant of a different you are willing to collapse in the tree, and it prunes the tree down to this maximum threshold -- Penalty is now a phred-scaled p-value not the raw chi2 value -- Split command line arguments in VisualizeContextTree into separate arguments for each type of pruning		2012-08-07 17:22:39 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	AdaptiveContexts implement pruning to a given chi2 p value	2012-08-07 17:22:39 -04:00
test	The UnifiedGenotyper now makes use of base insertion and base deletion quality scores if they exist in the reads.	2012-08-07 13:58:22 -04:00