gatk3的最后一个经典版本3.8

Mark DePristo 80b94a4f9a AdaptiveContexts implement pruning to a given chi2 p value ... -- Added bonferroni corrected p-value pruning, so you tell it how significant of a different you are willing to collapse in the tree, and it prunes the tree down to this maximum threshold -- Penalty is now a phred-scaled p-value not the raw chi2 value -- Split command line arguments in VisualizeContextTree into separate arguments for each type of pruning		2012-08-07 17:22:39 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Update -maxAlleles argument in integration tests	2012-08-06 22:48:04 -04:00
public	AdaptiveContexts implement pruning to a given chi2 p value	2012-08-07 17:22:39 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	V1 of tool to visualize the quality score information in the context covariates	2012-07-31 08:11:02 -04:00