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gatk-3.8/java/src/org/broadinstitute/sting/alignment
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hanna 23d96b1d43 Help system content for the alignment module. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2322 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-12-11 16:01:25 +00:00
..
bwa Minor tweak to improve ease-of-use of iterator system. 2009-11-20 18:24:19 +00:00
reference Repackage the aligner for better partitioning. The C aligner, for example, is now 2009-11-13 22:55:27 +00:00
Aligner.java Minor tweak to improve ease-of-use of iterator system. 2009-11-20 18:24:19 +00:00
Alignment.java BWA: odds and ends. Get rid of some spurious debug code that was accidentally 2009-11-22 15:26:07 +00:00
AlignmentValidationWalker.java Help system content for the alignment module. 2009-12-11 16:01:25 +00:00
AlignmentWalker.java Help system content for the alignment module. 2009-12-11 16:01:25 +00:00
CountBestAlignmentsWalker.java Help system content for the alignment module. 2009-12-11 16:01:25 +00:00
package-info.java Help system content for the alignment module. 2009-12-11 16:01:25 +00:00