hanna 8089aa3c50 Adding support to override the help text. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2273 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-07 00:16:26 +00:00
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alignment	Convenience changes. If no -BWT option is specified, pull the BWT location from the reference.	2009-11-23 22:46:05 +00:00
analyzecovariates	Added comments to AnalyzeCovariates and R scripts. R script prevents residuals from going off the edge of the plot. Added skeleton code to the recalibration walkers showing how we plan to handle SOLID reference inserting behavior.	2009-12-02 23:15:52 +00:00
gatk	Updated the CallsetConcordance classes to use new VCF Variation code... and uncovered a whole bunch of VCF bugs in the process. I'm not convinced that I got them all, so I'll unit test like crazy when the refactoring is done.	2009-12-06 11:43:40 +00:00
oneoffprojects	Stage 1 of massive Variation/Genotype refactoring.	2009-12-06 03:12:41 +00:00
playground	Adding support to override the help text.	2009-12-07 00:16:26 +00:00
utils	Adding support to override the help text.	2009-12-07 00:16:26 +00:00