rpoplin 80658fd99e AnalyzeCovariates gets the same performance improvements as the recalibrator. NHashMap class is removed completely. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2483 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-30 18:10:10 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	AnalyzeCovariates gets the same performance improvements as the recalibrator. NHashMap class is removed completely.	2009-12-30 18:10:10 +00:00
test/org/broadinstitute/sting	Added: integration test for extended pileup (with indels included)	2009-12-29 23:02:23 +00:00