gatk3的最后一个经典版本3.8

Mark DePristo 804caf7a45 HaplotypeCaller Optimization: return a inactive (p = 0.0) activity if the context has no bases in the pileup ... -- Allows us to avoid doing a lot of misc. work to set up the genotype when we don't have any data to genotype. Valuable in the case where we are passing through large regions without any data		2013-01-27 14:10:06 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	HaplotypeCaller Optimization: return a inactive (p = 0.0) activity if the context has no bases in the pileup	2013-01-27 14:10:06 -05:00
public	Optimization: LocusReferenceView now passes along the contig index to createGenomeLoc, speeding up their creation	2013-01-27 14:10:06 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00