Mark DePristo 8026199e4c Updating md5s for CountReadsInActiveRegions and HaplotypeCaller to reflect new activity profile mechanics ... -- In this process I discovered a few missed sites in the old code. The new approach actually produces better HC results than the previous version.		2013-01-23 13:46:01 -05:00
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annotator	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
beagle	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
bqsr	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
compression/reducereads	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
diagnostics	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
diffengine	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
fasta	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
filters	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
genotyper	Optimized the Allele Biased Downsampling: now it doesn't re-sort the pileup but just removes reads from the original one.	2013-01-18 11:17:31 -05:00
haplotypecaller	Updating md5s for CountReadsInActiveRegions and HaplotypeCaller to reflect new activity profile mechanics	2013-01-23 13:46:01 -05:00
indels	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
phasing	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
validation	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
varianteval	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
variantrecalibration	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
variantutils	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2013-01-22 15:31:30 -05:00