gatk3的最后一个经典版本3.8

Mark DePristo 8026199e4c Updating md5s for CountReadsInActiveRegions and HaplotypeCaller to reflect new activity profile mechanics ... -- In this process I discovered a few missed sites in the old code. The new approach actually produces better HC results than the previous version.		2013-01-23 13:46:01 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Updating md5s for CountReadsInActiveRegions and HaplotypeCaller to reflect new activity profile mechanics	2013-01-23 13:46:01 -05:00
public	Renaming IncrementalActivityProfile to ActivityProfile	2013-01-23 13:46:01 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00