Mark DePristo 800bb97f0b Removed getFeaturesAsGATKFeature and created createGenomeLoc(Feature) in genomeLocParser ... Updated all walkers that used the now deleted methods.		2011-08-03 16:04:51 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Removed getFeaturesAsGATKFeature and created createGenomeLoc(Feature) in genomeLocParser	2011-08-03 16:04:51 -04:00