Mauricio Carneiro 7ffedf211c Contig comparator -- sorting contigs like Picard ... This is very useful if you want to output your text files or manipulate data in the usual chromosome ordering : 1 2 3 ... 21 22 X Y GL??? ... Just use this comparator in any SortedSet class constructor and your data will be sorted like in the BAM file.		2011-07-24 02:33:19 -04:00
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R	Moving AnalyzeAnnotations into the archive because it has outlived its usefulness.	2011-07-02 10:39:53 -04:00
c	BWA bindings and tests moved to public (was required for ValidationAmplicons)	2011-07-19 20:11:31 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Contig comparator -- sorting contigs like Picard	2011-07-24 02:33:19 -04:00
packages	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Memory limits changed from Int to Double.	2011-07-21 22:57:18 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00