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Mauricio Carneiro 7ffedf211c Contig comparator -- sorting contigs like Picard
This is very useful if you want to output your text files or manipulate data in the usual chromosome ordering :
 1
 2
 3
 ...
 21
 22
 X
 Y
 GL???
 ...

 Just use this comparator in any SortedSet class constructor and your data will be sorted like in the BAM file.
2011-07-24 02:33:19 -04:00
public Contig comparator -- sorting contigs like Picard 2011-07-24 02:33:19 -04:00
settings Using picard implementations for accessing aggregation directories. 2011-07-18 21:49:03 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml Merged bug fix from Stable into Unstable 2011-07-15 19:38:20 -04:00
ivy.xml Merged bug fix from Stable into Unstable, and resolved merge conflicts. 2011-07-08 15:50:31 -04:00