Mark DePristo 7fd27a5167 Add band pass filtering activity profile ... -- Based on the new incremental activity profile -- Unit Tested! Fixed a few bugs with the old band pass filter -- Expand IncrementalActivityProfileUnitTest to test the band pass filter as well for basic properties -- Add new UnitTest for BandPassIncrementalActivityProfile -- Added normalizeFromRealSpace to MathUtils -- Cleanup unused code in new activity profiles		2013-01-23 13:46:01 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Add band pass filtering activity profile	2013-01-23 13:46:01 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2013-01-18 15:03:42 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00