gatk3的最后一个经典版本3.8

Mark DePristo 7fb620dce7 Generalize and fixup ContigComparator ... -- Now uses a SAMSequenceDictionary to do the comparison of contigs (which is the right way to do it) -- Added unit tests		2013-02-09 09:52:13 -05:00
licensing	Added distance across contigs calculation to GenomeLocs	2013-02-07 16:31:41 -05:00
protected/java	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00
public	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00