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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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hanna 7fa6b2135b Added a back door so that integration tests can reset the sequence dictionary 
in the reference.  Reset routine is not accessible to any class outside
GenomeLocParser's package.

We'll have to do something more intelligent with this when the GATK goes
distributed.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4275 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-09-14 18:58:08 +00:00
R Removed unused dependency (it was causing a problem by looking for an X11 connection that didn't necessarily exist). 2010-09-09 19:56:00 +00:00
archive Cleaning up playground utils and tests 2010-08-27 01:25:47 +00:00
c Reduce file handle usage. 2010-01-05 18:03:01 +00:00
doc removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
java Added a back door so that integration tests can reset the sequence dictionary 2010-09-14 18:58:08 +00:00
matlab Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function 2009-11-30 20:02:25 +00:00
packages Fix for DoC issue with multiplexer -- will retire use of multiplexer when 2010-09-07 00:44:07 +00:00
perl - Update DoC to support output to /dev/null. 2010-09-08 23:43:18 +00:00
python more useful reports 2010-09-12 14:03:44 +00:00
ruby accidentally commited an old tool 2010-08-25 15:42:02 +00:00
scala Fix for Queue 2010-09-12 15:18:08 +00:00
settings The battle is over. Picard is revved. 2010-09-03 05:28:01 +00:00
shell continuing improvements to the queueStatus helper script 2010-09-12 14:04:59 +00:00
testdata and add changes to the vcf used in testing 2010-06-25 02:56:02 +00:00
LICENSE Adding a license to the root directory in case BOSC checks for one. Has the 2010-04-20 16:04:29 +00:00
build.xml - Include the fasta index builder in the package. 2010-09-08 20:37:54 +00:00
ivy.xml Okay, finally done with VCF compression. Now: 2010-08-24 16:36:54 +00:00