rpoplin 49c44e7b36 PairedReadOrderCovariate is now a standard covariate and because of this CycleCovariate no longer multiplies by negative one for second of pair reads. Added PairedReadOrderCovariate to some of the integration tests. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2574 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-13 20:09:10 +00:00
..
Aligner.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
CreatePackager.xsl	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
FixBAMSortOrder.xml	Adding a package description for making a version of the GATK that only includes the FixBAMSortOrderTag walker.	2009-12-22 00:35:24 +00:00
GATK-Picard.xml	Create package that contains just what Picard needs.	2009-12-21 18:48:27 +00:00
GATKResources.xml	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
GenomeAnalysisTK.xml	PairedReadOrderCovariate is now a standard covariate and because of this CycleCovariate no longer multiplies by negative one for second of pair reads. Added PairedReadOrderCovariate to some of the integration tests.	2010-01-13 20:09:10 +00:00
PicardPrivate.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
VCFValidator.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00