gatk-3.8

gatk3的最后一个经典版本3.8

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Christopher Hartl 7f3ad25b01 Adding a mode to VariantFiltration to invalidate previously-applied filters to allow complete re-filtering of a VCF. T2D VQSR: re-calling now done with appropriate quality settings and using BAQ.		2012-01-19 10:54:48 -05:00
public	Adding a mode to VariantFiltration to invalidate previously-applied filters to allow complete re-filtering of a VCF.	2012-01-19 10:54:48 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00