ebanks 7f1159b6a9 Added option to mask out SNP sites with "N"s in the new reference. ... This is useful when producing Sequenom input files for validating indels... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1414 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-12 15:17:45 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Added option to mask out SNP sites with "N"s in the new reference.	2009-08-12 15:17:45 +00:00
test/org/broadinstitute/sting	added the ability to pass in a csv file of ROD triplets (one triplet per line) to the -B option	2009-08-11 22:10:20 +00:00