7eea6b8f92
-- Add an option to not allocate always ArrayLists of targetSampleSize, but rather the previous size + MARGIN. This helps for LIBS as most of the time we don't need nearly so much space as we allow -- consumeFinalizedItems returns an empty list if the reservior is empty, which it often true for our BAM files with low coverage -- Allow empty sample lists for SamplePartitioner as these are used by the RefTraversals and other non-read based traversals Make the reservoir downsampler use a linked list, rather than a fixed sized array list, in the expectFewOverflows case |
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