gatk-3.8/protected
Mark DePristo 7bf1f67273 BQSR optimization: read group x quality score calibration table is thread-local
-- AdvancedRecalibrationEngine now uses a thread-local table for the quality score table, and in finalizeData merges these thread-local tables into the final table.  Radically reduces the contention for RecalDatum in this very highly used table
-- Refactored the utility function to combine two tables into RecalUtils, and created UnitTests for this function, as well as all of RecalibrationTables.  Updated combine in RecalibrationReport to use this table combiner function
-- Made several core functions in RecalDatum into final methods for performance
-- Added RecalibrationTestUtils, a home for recalibration testing utilities
2012-12-24 13:35:58 -05:00
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java BQSR optimization: read group x quality score calibration table is thread-local 2012-12-24 13:35:58 -05:00