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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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asivache 7e5e422591 ReferenceOrdereData now inspects the ROD class using reflection. If the ROD declares a static Iterator<ROD> createIterator(String rodName, File rodFile) factory method, it is wrapped and used by the ReferenceOrderedData to read records from rodFile. If the ROD does not provide such factory method, the old behavior is the default: ReferenceOrderedData uses its own simple default iterator to read the file line by line (assuming there is only one line per record/position). 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@768 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-05-21 15:23:22 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc Added documentation for calling the GATK from Matlab. This is to document the extreme basic and experimental support for using Matlab to call the GATK, and is more of a placeholder for when we have time to revisit supporting this. 2009-05-13 15:25:51 +00:00
java ReferenceOrdereData now inspects the ROD class using reflection. If the ROD declares a static Iterator<ROD> createIterator(String rodName, File rodFile) factory method, it is wrapped and used by the ReferenceOrderedData to read records from rodFile. If the ROD does not provide such factory method, the old behavior is the default: ReferenceOrderedData uses its own simple default iterator to read the file line by line (assuming there is only one line per record/position). 2009-05-21 15:23:22 +00:00
python Slightly improved interface to merging utility for multiple bam files 2009-05-20 12:54:41 +00:00
settings Upped sam-jdk jar to new version in public picard repository. 2009-05-17 15:03:05 +00:00
shell Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
testdata Better interface to the tabular ROD, now makes writing files easier. Also has corresponding test files 2009-05-14 23:20:11 +00:00
build.xml We now only build the files that have changed. It should speed up compile time as our source tree grows. 2009-05-15 20:48:01 +00:00
ivy.xml add javassist, which is a less lower level version of bcel. 2009-05-20 05:11:03 +00:00