Mark DePristo 7df47418d8 BQSR optimization: make RecalibrationTables thread-local, and merge results in onTraversalDone ... -- With the newer, faster BQSR, scaling was limited by the NestedIntegerArray. The solution to this is to make the entire table thread-local, so that each nct thread has its own data and doesn't have any collisions. -- Removed the previous partial solution of having a thread-local quality score table -- Added a new argument -lowMemory		2013-01-04 11:39:24 -05:00
..
src/org/broadinstitute/sting	BQSR optimization: make RecalibrationTables thread-local, and merge results in onTraversalDone	2013-01-04 11:39:24 -05:00
test/org/broadinstitute/sting	One md5sum slipped past in the HC integration test.	2013-01-02 15:09:28 -05:00