gatk3的最后一个经典版本3.8

Mark DePristo 7dcafe8b81 Preliminary version of LoglessCachingPairHMM that avoids positive likelihoods ... -- Would have been squashed but could not because of subsequent deletion of Caching and Exact/Original PairHMMs -- Actual working unit tests for PairHMMUnitTest -- Fixed incorrect logic in how I compared hmm results to the theoretical and exact results -- PairHMM has protected variables used throughout the subclasses		2013-02-09 13:06:54 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Preliminary version of LoglessCachingPairHMM that avoids positive likelihoods	2013-02-09 13:06:54 -05:00
public	Preliminary version of LoglessCachingPairHMM that avoids positive likelihoods	2013-02-09 13:06:54 -05:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00