Mark DePristo 7fb620dce7 Generalize and fixup ContigComparator ... -- Now uses a SAMSequenceDictionary to do the comparison of contigs (which is the right way to do it) -- Added unit tests		2013-02-09 09:52:13 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00
test	Added distance across contigs calculation to GenomeLocs	2013-02-07 16:31:41 -05:00