rpoplin 7db9601c9d Checking in the 1000G phase1 cleaning and calling scripts for posterity's sake, but also to show everyone what the current best practices for VQSR training looks like. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5015 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-19 14:32:52 +00:00
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qscript	Checking in the 1000G phase1 cleaning and calling scripts for posterity's sake, but also to show everyone what the current best practices for VQSR training looks like.	2011-01-19 14:32:52 +00:00
src/org/broadinstitute/sting	VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks.	2011-01-18 20:48:19 +00:00
test/org/broadinstitute/sting/queue	Updated to reflect QD changes in r4984	2011-01-13 20:10:21 +00:00