Mark DePristo 7d95176539 Bugfix to compareTo and equals in GenomeLoc ... -- Yes, GenomeLoc.compareTo was broken. The compareTo function only considered the contig and start position, but not the stop, when comparing genome locs. -- Updated GenomeLoc.compareTo function to account for stop. Updated GATK code where necessary to fix resulting problems that depended on this. -- Added unit tests to ensure that hashcode, equals, and compareTo are all correct for GenomeLocs		2012-08-30 19:41:49 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bugfix to compareTo and equals in GenomeLoc	2012-08-30 19:41:49 -04:00
test	Bugfix to compareTo and equals in GenomeLoc	2012-08-30 19:41:49 -04:00