David Roazen 7d90bbab08 Add support for snpEff "GATK compatibility mode" (-o gatk) ... -Do not throw an exception when parsing snpEff output files generated by not-officially-supported versions of snpEff, PROVIDED that snpEff was run with -o gatk -Requested by the snpEff author -Relevant integration tests updated/expanded		2013-04-26 15:47:15 -04:00
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src/org/broadinstitute/sting	Various bug fixes for recent Reduce Reads additions plus solution implemented for low MQ reads.	2013-04-24 18:18:50 -04:00
test/org/broadinstitute/sting	Add support for snpEff "GATK compatibility mode" (-o gatk)	2013-04-26 15:47:15 -04:00