David Roazen 7d90bbab08 Add support for snpEff "GATK compatibility mode" (-o gatk) ... -Do not throw an exception when parsing snpEff output files generated by not-officially-supported versions of snpEff, PROVIDED that snpEff was run with -o gatk -Requested by the snpEff author -Relevant integration tests updated/expanded		2013-04-26 15:47:15 -04:00
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java	Add support for snpEff "GATK compatibility mode" (-o gatk)	2013-04-26 15:47:15 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00