gatk3的最后一个经典版本3.8

David Roazen 7d90bbab08 Add support for snpEff "GATK compatibility mode" (-o gatk) ... -Do not throw an exception when parsing snpEff output files generated by not-officially-supported versions of snpEff, PROVIDED that snpEff was run with -o gatk -Requested by the snpEff author -Relevant integration tests updated/expanded		2013-04-26 15:47:15 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Add support for snpEff "GATK compatibility mode" (-o gatk)	2013-04-26 15:47:15 -04:00
public	Add support for snpEff "GATK compatibility mode" (-o gatk)	2013-04-26 15:47:15 -04:00
settings	Rev picard, sam-jdk, tribble, and variant jars to version 1.90.1442	2013-04-25 14:05:24 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Add additional necessary class files to na12878kb.jar target	2013-04-23 14:03:48 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00