chartl 7d6d114ab5 Additions: ... @NQSMismatchCovariantWalker - Walks along the gene calculating the table # NQS # Q score # mismatches at non-dbsnp sites # total number of bases at non-dbsnp sites And prints it out at the end. Changes: @PooledGenotypeConcordance now works. Takes a path to a file listing a bunch of hapmap IDs in whatever pool we want to check, reads those in, and checks for concordance by name. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1614 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-14 20:12:04 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Additions:	2009-09-14 20:12:04 +00:00
test/org/broadinstitute/sting	Changes to switch Variant Eval over to the new Variation system.	2009-09-14 05:34:33 +00:00