Roger Zurawicki ac36271457 Fixed extra reads showing up in Variable Sites ... Reads that were not hard clipped for the variable site no longer show up in output file Walker now uses unclippedStart of Read to determine position in the sliding Window		2011-08-23 11:26:00 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Fixed extra reads showing up in Variable Sites	2011-08-23 11:26:00 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Creating sample-bam list instead of joining	2011-08-22 18:03:39 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00