Mauricio Carneiro 7d3dfdfdf2 Updating the MDCP to use the classpath for the GATK jar, removing -gatk parameter.		2011-07-05 16:30:10 -04:00
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examples	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Added an optional argument -bt <num_threads> for BWA to run multithreaded.	2011-06-30 14:41:57 -04:00
GATKResourcesBundle.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00
MethodsDevelopmentCallingPipeline.scala	Updating the MDCP to use the classpath for the GATK jar, removing -gatk parameter.	2011-07-05 16:30:10 -04:00
RecalibrateBaseQualities.scala	Added capability of running multiple bam files in the same directory.	2011-07-01 16:02:28 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00