Mark DePristo 7d11f93b82 Final bugfix for CombineVariants ... -- Now handles multiple records at a site, so that you don't see records like set=dbsnp-dbsnp-dbsnp when combining something with dbsnp -- Proper handling of ids. If you are merging files with multiple ids for the same record, the ids are merged into a comma separated list		2011-09-21 10:58:32 -04:00
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R	Fixing units in queue job report Gantt plots	2011-09-12 09:01:34 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Final bugfix for CombineVariants	2011-09-21 10:58:32 -04:00
packages	Removing some old cruft from the packages dir. Updating AnalyzeCovariates to include all Covariates.	2011-09-12 15:09:25 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00