Mark DePristo 7d09c0064b Bug fixes and code cleanup throughout ... -- chromosomeCounts now takes builder as well, cleaning up a lot of code throughout the codebase.		2011-11-19 18:40:15 -05:00
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R	Compacting pdfs when running under R 2.13+.	2011-10-27 14:51:56 -04:00
c	…
chainFiles	…
doc	…
java	Bug fixes and code cleanup throughout	2011-11-19 18:40:15 -05:00
packages	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	During flanking interval creation merging overlapping flanks so that on scatter the list doesn't accidentally genotype the same site twice.	2011-11-17 13:56:42 -05:00
testdata	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00