Eric Banks 0323caefc8 Added some bug fixes to the gVCF merging code after finally getting some real data to play with. ... Still under construction, awaiting more test data from Valentin.		2014-01-08 08:34:35 -05:00
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commandline	Adding the functionality to enable users to input a file of VCFs for -V.	2014-01-08 00:45:00 -05:00
gatk	Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out.	2013-12-11 14:07:18 -05:00
jna	Fix pipeline tests that were not respecting the pipeline test dry run setting	2013-06-28 15:27:17 -04:00
utils	Added some bug fixes to the gVCF merging code after finally getting some real data to play with.	2014-01-08 08:34:35 -05:00
BaseTest.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
ExampleToCopyUnitTest.java	Add a class-based DataProvider	2013-12-03 13:31:01 -05:00
MD5DB.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
MD5Mismatch.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
WalkerTest.java	Throw a GVCFIndexException when the user doesn't specify the optimal indexing strategy	2013-12-03 23:12:14 -05:00