gatk-3.8/public/java/test/org/broadinstitute
David Roazen 24b72334b3 UnifiedGenotyper now correctly initializes the VariantAnnotator engine.
This allows the annotation classes to perform any necessary initialization/validation.
For example, it allows the SnpEff annotator to (among other things) validate its rod binding.
This will prevent a NullPointerException when SnpEff annotation is requested but no rod binding
is present.

Added an integration test to cover this case so that it doesn't break again.
2011-10-11 12:02:05 -04:00
..
sting UnifiedGenotyper now correctly initializes the VariantAnnotator engine. 2011-10-11 12:02:05 -04:00