David Roazen 24b72334b3 UnifiedGenotyper now correctly initializes the VariantAnnotator engine. ... This allows the annotation classes to perform any necessary initialization/validation. For example, it allows the SnpEff annotator to (among other things) validate its rod binding. This will prevent a NullPointerException when SnpEff annotation is requested but no rod binding is present. Added an integration test to cover this case so that it doesn't break again.		2011-10-11 12:02:05 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	UnifiedGenotyper now correctly initializes the VariantAnnotator engine.	2011-10-11 12:02:05 -04:00