Mark DePristo 7cab6f6bb0 Bug fixes for thread unsafe simple timer and bad Ns treatment in AlignmentUtils ... -- SimpleTimer is now threadsafe using synchronized method keywords -- Bug fix for alignmentToByteArray() where the N case was refPos++ not the now correct refPos += elementLength		2011-10-13 15:53:12 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fixes for thread unsafe simple timer and bad Ns treatment in AlignmentUtils	2011-10-13 15:53:12 -04:00
test	UnifiedGenotyper now correctly initializes the VariantAnnotator engine.	2011-10-11 12:02:05 -04:00