gatk3的最后一个经典版本3.8

Mark DePristo 7cab6f6bb0 Bug fixes for thread unsafe simple timer and bad Ns treatment in AlignmentUtils ... -- SimpleTimer is now threadsafe using synchronized method keywords -- Bug fix for alignmentToByteArray() where the N case was refPos++ not the now correct refPos += elementLength		2011-10-13 15:53:12 -04:00
public	Bug fixes for thread unsafe simple timer and bad Ns treatment in AlignmentUtils	2011-10-13 15:53:12 -04:00
settings	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Codecs other than VCF accidentally bled into vcf.jar. Unfortunately, vcf.jar	2011-10-08 22:24:35 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00