gatk-3.8/scala/src/org/broadinstitute/sting/queue
kshakir 5ee12875fb Emergency fix for Ryan:
- Catching errors when LSF fails and retrying.
- When LSF retries fail, catching the error, marking the job as failed, and no longer bkilling everything by exiting Queue.
- Caching function fields by class instead of each instance of a function saving a list of its fields.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4490 348d0f76-0448-11de-a6fe-93d51630548a
2010-10-13 22:22:01 +00:00
..
engine Emergency fix for Ryan: 2010-10-13 22:22:01 +00:00
extensions Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
function Emergency fix for Ryan: 2010-10-13 22:22:01 +00:00
pipeline Scala protected is more akin to Java private than Java protected. Not typing these defs. 2010-10-08 19:36:23 +00:00
util Emergency fix for Ryan: 2010-10-13 22:22:01 +00:00
QCommandLine.scala Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster. 2010-10-07 01:19:18 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Somewhat major update. Changes: 2010-10-08 13:30:28 +00:00
QScriptManager.scala Emergency fix for Ryan: 2010-10-13 22:22:01 +00:00
QSettings.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00