gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 7c8a1ae892 Fix for SW to make double comparisons with a tolerance Stories: - https://www.pivotaltracker.com/story/show/69577868 Changes: - Added a epsilon difference tolerance in weight comparisons. Tests: - Added HaplotypeCallerIntegrationTest#testDifferentIndelLocationsDueToSWExactDoubleComparisonsFix - Updated md5 due to minor likelihood changes. - Disabled a test for PathUtils.calculateCigar since does not work and is unclear what is causing the error (needs original author input)		2014-05-23 01:48:48 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fix for SW to make double comparisons with a tolerance	2014-05-23 01:48:48 -04:00
public	Fix for SW to make double comparisons with a tolerance	2014-05-23 01:48:48 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/