gatk-3.8/public/scala/qscript/org/broadinstitute/sting/queue/qscripts
Mauricio Carneiro 945cf03889 IntelliJ ate my import! 2012-01-23 21:46:45 -05:00
..
examples Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc. 2012-01-23 16:17:04 -05:00
lib moving the example scala scripts to the qscripts package. 2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
GATKResourcesBundle.scala Replacing Mills file with new gold standard indel set in the resource bundle for release with v1.5 2012-01-17 15:02:45 -05:00
MethodsDevelopmentCallingPipeline.scala adding dbsnp to indel VQSR 2012-01-10 12:38:49 -05:00
PacbioProcessingPipeline.scala IntelliJ ate my import! 2012-01-23 21:46:45 -05:00