Mauricio Carneiro 7c7ca0d799 fixing bug with fastq extension ... * PPP only recognized .fasta and .fq, failing when the user provided a .fastq file. Fixed.		2012-01-24 11:02:15 -05:00
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R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Fix for ref 0 bases for Chris	2012-01-24 10:55:09 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	fixing bug with fastq extension	2012-01-24 11:02:15 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00