Mark DePristo 7c5c656b46 Uncovered fundamental accounting bug in VariantEval. Will be fixed by dev. team ... Problem is that Novelty sees multiple records at a site (SNP, INDEL) to calculate whether a site is novel, but VariantEvalWalker makes an arbitrary decision which to use for analysis and CompOverlap may not see a comp record of the same type as eval. So you get lines where the stratification is known but there are 10 novel sites!		2011-07-28 14:19:27 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Uncovered fundamental accounting bug in VariantEval. Will be fixed by dev. team	2011-07-28 14:19:27 -04:00