Mauricio Carneiro 4748ae0a14 Bugfix: Softclips before Hardclips weren't being accounted for ... caught a bug in the hard clipper where it does not account for hard clipping softclipped bases in the resulting cigar string, if there is already a hard clipped base immediately after it. * updated unit test for hardClipSoftClippedBases with corresponding test-case.		2011-12-15 12:17:25 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Bugfix: Softclips before Hardclips weren't being accounted for	2011-12-15 12:17:25 -05:00