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Mauricio Carneiro 7c3b3650bb BQSR bug triage 
* fixed bug where some keys were using the same recal datum objects
    * fixed quantization qual calculations when combining multiple reports
    * fixed rounding error with empirical quality reported when combining reports
    * fixed combine routine in the gatk reports due to the primary keys being out of order
    * added auto-recalibration option to BQSR scala script
    * reduced the size of the recalibration report by ~15%
    * updated md5's
 		2012-04-05 09:32:18 -04:00
..
R Further cleanup of R 2012-03-22 21:24:37 -04:00
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
doc Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
java BQSR bug triage 2012-04-05 09:32:18 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
perl Update to the bindings for liftOverVCF.pl (to -V from -B) 2011-09-15 15:33:09 -04:00
scala Added more primitives to GATK Report Column Type 2012-03-28 09:07:54 -04:00
testdata BQSR bug triage 2012-04-05 09:32:18 -04:00