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gatk-3.8/public/java/test/org/broadinstitute/sting/utils/recalibration
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Mark DePristo e1bba91836 Ready for full-scale evaluation adaptive BQSR contexts 
-- VisualizeContextTree now can write out an equivalent BQSR table determined after adaptive context merging of all RG x QUAL x CONTEXT trees
-- Docs, algorithm descriptions, etc so that it makes sense what's going on
-- VisualizeContextTree should really be simplified when into a single tool that just visualize the trees when / if we decide to make adaptive contexts standard part of BQSR
 -- Misc. cleaning, organization of the code (recalibation tests were in private but corresponding actual files were public)
 		2012-08-03 16:02:53 -04:00
..
AdaptiveContextUnitTest.java Ready for full-scale evaluation adaptive BQSR contexts 2012-08-03 16:02:53 -04:00
ContextCovariateUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
CycleCovariateUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
QualQuantizerUnitTest.java Ready for full-scale evaluation adaptive BQSR contexts 2012-08-03 16:02:53 -04:00
ReadCovariatesUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
ReadGroupCovariateUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
RecalDatumUnitTest.java Ready for full-scale evaluation adaptive BQSR contexts 2012-08-03 16:02:53 -04:00
RecalibrationReportUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00